PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn214171
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family B3
Protein Properties Length: 505aa    MW: 56025.4 Da    PI: 6.1054
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn214171genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.64.1e-1762172198
                 EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                 f+kvl+ sd+++ grlvlpk +ae +              +++ e++ ++++d +g++W++++++  +++s++yvl+ G     +  +L++gD+v+F++
  Achn214171  62 FEKVLSASDAGRIGRLVLPKACAELYiyvkcelmqayfpPISQSEGVPIRIQDIKGKEWTLQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDTVIFSR 159
                 99*********************999*****99999999666678999***************9989999999***9.********************8 PP

                 -SSSEE..EEEEE- CS
          B3  85 dgrsefelvvkvfr 98 
                 ++  +++lv+++++
  Achn214171 160 ID-PGRKLVMGFRK 172
                 76.66666666665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.6E-2656179IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.68E-1859173IPR015300DNA-binding pseudobarrel domain
CDDcd100173.19E-2160172No hitNo description
PfamPF023622.0E-1462172IPR003340B3 DNA binding domain
SMARTSM010192.2E-1662174IPR003340B3 DNA binding domain
PROSITE profilePS5086310.06662173IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MTYRLDEGGV EGMGDDVDRR EKRKEEDLIG VNGEDLHERI VPRDDDGVRV EESLNSTIVP  60
LFEKVLSASD AGRIGRLVLP KACAELYIYV KCELMQAYFP PISQSEGVPI RIQDIKGKEW  120
TLQFRFWPNN NSRMYVLEGV TPCIQNMQLQ AGDTVIFSRI DPGRKLVMGF RKASNSVDMQ  180
DSQTSSLANS APSGETSTSA VNDDLPTKHG GRTNEDLSQR PMPVPEKKRS RNIGSKCKRL  240
LMHSEDAMEL RLTWAEAQEL LSPPPNVKPT VVMVDDQEFE EYEAKSKRRR ITERRNVPQV  300
REPSGLEALA TAAVLGANAG DPDGPSAGPT TKHPRHRPGC TCIVCIQPPS GKGRHKDTCI  360
CNVCLTVKRR FKTFMLRKKK REREAEIARG KDLGPSKDEP DVHVNSPEEE DQRQNTIPKD  420
VAETSKGHLD LNCDPNREDD VLGLMSLVHA ASLPVEMYLR KNGVADLGPY LLSQAAGEID  480
QGRLPDEGCV SSLVGYCANR GDER*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1286290KRRRI
2367378KRRFKTFMLRKK
3367380KRRFKTFMLRKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009772834.11e-165PREDICTED: B3 domain-containing transcription repressor VAL1-like
SwissprotQ8W4L55e-83VAL1_ARATH; B3 domain-containing transcription repressor VAL1
TrEMBLA0A0V0IVX71e-164A0A0V0IVX7_SOLCH; Putative B3 domain-containing protein-like
TrEMBLA5AZP01e-164A5AZP0_VITVI; Putative uncharacterized protein
STRINGSolyc06g082520.2.11e-158(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14912365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.13e-84high-level expression of sugar-inducible gene 2